RCSB Protein Data Bank
Experimentally determined 3D structures of proteins, nucleic acids and their complexes from the RCSB Protein Data Bank (wwPDB archive, CC0): search by text, organism, experimental method, resolution, release date, UniProt accession or bound ligand; full entry records with polymer entities, organisms, UniProt mappings, ligands, glycans, primary citation and coordinate download links; and Chemical Component Dictionary records for ligands with identifiers and cross-references (ChEMBL, DrugBank, PubChem, ChEBI). Uses the keyless RCSB Search and Data APIs.
Try RCSB Protein Data Bank now.
Choose an example or ask your own question.
const result = await firecrawl.scrape({
alexandria: {
provider: "rcsb-org",
capability: "structures/search",
options: {
limit: 25,
query: "imatinib",
uniprot_accession: "P00519",
},
},
});This is a sample shape. Press Run to see live data from RCSB Protein Data Bank.
- license
- CC0-1.0
- limit
- 25
- next_offset
- null
- observed_at_ms
- 1792447131657
- offset
- 0
- source_url
- https://search.rcsb.org/rcsbsearch/v2/query?json=%7B%22query%22%3A%7B%22logical_operator%22%3A%22and%22%2C%22nodes%22%3A%5B%7B%22parameters%22%3A%7B%22value%22%3A%22imatinib%22%7D%2C%22service%22%3A%22full_text%22%2C%22type%22%3A%22terminal%22%7D%2C%7B%22label%22%3A%22nested-attribute%22%2C%22logical_operator%22%3A%22and%22%2C%22nodes%22%3A%5B%7B%22parameters%22%3A%7B%22attribute%22%3A%22rcsb_polymer_entity_container_identifiers.reference_sequence_identifiers.database_accession%22%2C%22operator%22%3A%22exact_match%22%2C%22value%22%3A%22P00519%22%7D%2C%22service%22%3A%22text%22%2C%22type%22%3A%22terminal%22%7D%2C%7B%22parameters%22%3A%7B%22attribute%22%3A%22rcsb_polymer_entity_container_identifiers.reference_sequence_identifiers.database_name%22%2C%22operator%22%3A%22exact_match%22%2C%22value%22%3A%22UniProt%22%7D%2C%22service%22%3A%22text%22%2C%22type%22%3A%22terminal%22%7D%5D%2C%22type%22%3A%22group%22%7D%5D%2C%22type%22%3A%22group%22%7D%2C%22request_options%22%3A%7B%22paginate%22%3A%7B%22rows%22%3A25%2C%22start%22%3A0%7D%2C%22results_content_type%22%3A%5B%22experimental%22%5D%2C%22sort%22%3A%5B%7B%22direction%22%3A%22desc%22%2C%22sort_by%22%3A%22score%22%7D%5D%7D%2C%22return_type%22%3A%22entry%22%7D
- total_count
- 9
| experimental_method | initial_release_date | organisms | pdb_id | resolution_angstrom | score | title | uniprot_accessions | url |
|---|---|---|---|---|---|---|---|---|
| X-ray | Homo sapiens | 7N9G | 2.2 | 0.7971516267184301 | P00519 | rcsb.org/structure/7N9G | ||
| X-ray | Homo sapiens | 2HYY | 2.4 | 0.7550836593244821 | P00519 | rcsb.org/structure/2HYY | ||
| X-ray | Homo sapiens | 3PYY | 1.85 | 0.7291328351654636 | P00519 | rcsb.org/structure/3PYY | ||
| X-ray | Homo sapiens | 6NPE | 2.15 | 0.7291328351654636 | P00519 | rcsb.org/structure/6NPE | ||
| X-ray | Homo sapiens | 6NPU | 2.33 | 0.7291328351654636 | P00519 | rcsb.org/structure/6NPU | ||
| X-ray | Homo sapiens | 6NPV | 1.86 | 0.7291328351654636 | P00519 | rcsb.org/structure/6NPV | ||
| X-ray | Homo sapiens | 2F4J | 1.91 | 0.6750003573657603 | P00519 | rcsb.org/structure/2F4J | ||
| X-ray | Homo sapiens | 2GQG | 2.4 | 0.619613473193679 | P00519 | rcsb.org/structure/2GQG | ||
| X-ray | Homo sapiens | 3CS9 | 2.21 | 0.5665768890301535 | P00519 | rcsb.org/structure/3CS9 |
Data from the RCSB Protein Data Bank, CC0 1.0. Attribution is encouraged. (https://www.rcsb.org/pages/usage-policy)
